PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g078300.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 281aa    MW: 31724.7 Da    PI: 8.0473
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g078300.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.5e-19130184256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Sopim08g078300.0.1 130 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 184
                         788899***********************************************98 PP
2HD-ZIP_I/II129.11.8e-41130219191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Sopim08g078300.0.1 130 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 219
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.4E-322105IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.606.9E-18117180IPR009057Homeodomain-like
SuperFamilySSF466892.01E-18122187IPR009057Homeodomain-like
PROSITE profilePS5007117.329126186IPR001356Homeobox domain
SMARTSM003893.0E-16128190IPR001356Homeobox domain
CDDcd000868.09E-15130187No hitNo description
PfamPF000463.5E-16130184IPR001356Homeobox domain
PRINTSPR000312.7E-5157166IPR000047Helix-turn-helix motif
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
PRINTSPR000312.7E-5166182IPR000047Helix-turn-helix motif
PfamPF021832.1E-11186220IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.2E-27186229IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009641Biological Processshade avoidance
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0010016Biological Processshoot system morphogenesis
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MMVEKEDLGL SLSLSFPDNN NNNKKKNTQL NLSPFNLIQK TSWTDSLFPS SDRNIETCRV  60
ETRTFLKGID VNRLPATGDA DEEAGVSSPN STISSVSGNK RSEREANNCD QEEHEMERGG  120
SDEEDGETSR KKLRLSKDQS AILEESFKEH NTLNPKQKLA LAKRLGLRPR QVEVWFQNRR  180
ARTKLKQTEV DCEFLKRCCE NLTEENRRLQ KEVQELRALK LSPQFYMQMT PPTTLTMCPS  240
CERVAGPPPS SSGPTSTPMG QAQPRPMPFN LWANALHPRS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134SRKKLRL
2178186RRARTKLKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0107831e-175AP010783.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0006F21, complete sequence.
GenBankHG9755201e-175HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245792.10.0PREDICTED: homeobox-leucine zipper protein HAT4-like
SwissprotQ054661e-109HAT4_ARATH; Homeobox-leucine zipper protein HAT4
TrEMBLK4CNI90.0K4CNI9_SOLLC; Uncharacterized protein
STRINGSolyc08g078300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11182485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-102homeobox protein 2