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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g078300.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 281aa MW: 31724.7 Da PI: 8.0473 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.5e-19 | 130 | 184 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k Sopim08g078300.0.1 130 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 184 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.1 | 1.8e-41 | 130 | 219 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l Sopim08g078300.0.1 130 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 219 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.4E-32 | 2 | 105 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 6.9E-18 | 117 | 180 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.01E-18 | 122 | 187 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 126 | 186 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-16 | 128 | 190 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.09E-15 | 130 | 187 | No hit | No description |
Pfam | PF00046 | 3.5E-16 | 130 | 184 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 2.7E-5 | 157 | 166 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 161 | 184 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.7E-5 | 166 | 182 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.1E-11 | 186 | 220 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.2E-27 | 186 | 229 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0010016 | Biological Process | shoot system morphogenesis | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MMVEKEDLGL SLSLSFPDNN NNNKKKNTQL NLSPFNLIQK TSWTDSLFPS SDRNIETCRV 60 ETRTFLKGID VNRLPATGDA DEEAGVSSPN STISSVSGNK RSEREANNCD QEEHEMERGG 120 SDEEDGETSR KKLRLSKDQS AILEESFKEH NTLNPKQKLA LAKRLGLRPR QVEVWFQNRR 180 ARTKLKQTEV DCEFLKRCCE NLTEENRRLQ KEVQELRALK LSPQFYMQMT PPTTLTMCPS 240 CERVAGPPPS SSGPTSTPMG QAQPRPMPFN LWANALHPRS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 134 | SRKKLRL |
2 | 178 | 186 | RRARTKLKQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010783 | 1e-175 | AP010783.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0006F21, complete sequence. | |||
GenBank | HG975520 | 1e-175 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245792.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | Q05466 | 1e-109 | HAT4_ARATH; Homeobox-leucine zipper protein HAT4 | ||||
TrEMBL | K4CNI9 | 0.0 | K4CNI9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g078300.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1118 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 1e-102 | homeobox protein 2 |